Refactor codebase with modular structure and add caching system

- Restructure code into separate modules: data, algorithms, logging, cache
- Add efficient caching system for keys and encrypted distances
- Implement three sorting algorithms: selection, bitonic, heap
- Add comprehensive logging with timestamps and progress tracking
- Configure musl target for static compilation
- Support command-line algorithm selection and cache control

🤖 Generated with [Claude Code](https://claude.ai/code)

Co-Authored-By: Claude <noreply@anthropic.com>

Cargo.lock

@@ -23,6 +23,21 @@ dependencies = [
  "serde",
 ]
 
+[[package]]
+name = "android-tzdata"
+version = "0.1.1"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "e999941b234f3131b00bc13c22d06e8c5ff726d1b6318ac7eb276997bbb4fef0"
+
+[[package]]
+name = "android_system_properties"
+version = "0.1.5"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "819e7219dbd41043ac279b19830f2efc897156490d7fd6ea916720117ee66311"
+dependencies = [
+ "libc",
+]
+
 [[package]]
 name = "anstream"
 version = "0.6.19"
@@ -121,12 +136,36 @@ version = "1.23.1"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "5c76a5792e44e4abe34d3abf15636779261d45a7450612059293d1d2cfc63422"
 
+[[package]]
+name = "cc"
+version = "1.2.29"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "5c1599538de2394445747c8cf7935946e3cc27e9625f889d979bfb2aaf569362"
+dependencies = [
+ "shlex",
+]
+
 [[package]]
 name = "cfg-if"
 version = "1.0.1"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "9555578bc9e57714c812a1f84e4fc5b4d21fcb063490c624de019f7464c91268"
 
+[[package]]
+name = "chrono"
+version = "0.4.41"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "c469d952047f47f91b68d1cba3f10d63c11d73e4636f24f08daf0278abf01c4d"
+dependencies = [
+ "android-tzdata",
+ "iana-time-zone",
+ "js-sys",
+ "num-traits",
+ "serde",
+ "wasm-bindgen",
+ "windows-link",
+]
+
 [[package]]
 name = "cipher"
 version = "0.4.4"
@@ -183,6 +222,12 @@ version = "1.0.4"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "b05b61dc5112cbb17e4b6cd61790d9845d13888356391624cbe7e41efeac1e75"
 
+[[package]]
+name = "core-foundation-sys"
+version = "0.8.7"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "773648b94d0e5d620f64f280777445740e61fe701025087ec8b57f45c791888b"
+
 [[package]]
 name = "cpufeatures"
 version = "0.2.17"
@@ -316,6 +361,8 @@ name = "hfe_knn"
 version = "0.1.0"
 dependencies = [
  "anyhow",
+ "bincode",
+ "chrono",
  "clap",
  "rand",
  "serde",
@@ -323,6 +370,30 @@ dependencies = [
  "tfhe",
 ]
 
+[[package]]
+name = "iana-time-zone"
+version = "0.1.63"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "b0c919e5debc312ad217002b8048a17b7d83f80703865bbfcfebb0458b0b27d8"
+dependencies = [
+ "android_system_properties",
+ "core-foundation-sys",
+ "iana-time-zone-haiku",
+ "js-sys",
+ "log",
+ "wasm-bindgen",
+ "windows-core",
+]
+
+[[package]]
+name = "iana-time-zone-haiku"
+version = "0.1.2"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "f31827a206f56af32e590ba56d5d2d085f558508192593743f16b2306495269f"
+dependencies = [
+ "cc",
+]
+
 [[package]]
 name = "inout"
 version = "0.1.4"
@@ -599,6 +670,12 @@ dependencies = [
  "keccak",
 ]
 
+[[package]]
+name = "shlex"
+version = "1.3.0"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "0fda2ff0d084019ba4d7c6f371c95d8fd75ce3524c3cb8fb653a3023f6323e64"
+
 [[package]]
 name = "strsim"
 version = "0.11.1"
@@ -769,6 +846,7 @@ checksum = "1edc8929d7499fc4e8f0be2262a241556cfc54a0bea223790e71446f2aab1ef5"
 dependencies = [
  "cfg-if",
  "once_cell",
+ "rustversion",
  "wasm-bindgen-macro",
 ]
 
@@ -818,6 +896,65 @@ dependencies = [
  "unicode-ident",
 ]
 
+[[package]]
+name = "windows-core"
+version = "0.61.2"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "c0fdd3ddb90610c7638aa2b3a3ab2904fb9e5cdbecc643ddb3647212781c4ae3"
+dependencies = [
+ "windows-implement",
+ "windows-interface",
+ "windows-link",
+ "windows-result",
+ "windows-strings",
+]
+
+[[package]]
+name = "windows-implement"
+version = "0.60.0"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "a47fddd13af08290e67f4acabf4b459f647552718f683a7b415d290ac744a836"
+dependencies = [
+ "proc-macro2",
+ "quote",
+ "syn",
+]
+
+[[package]]
+name = "windows-interface"
+version = "0.59.1"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "bd9211b69f8dcdfa817bfd14bf1c97c9188afa36f4750130fcdf3f400eca9fa8"
+dependencies = [
+ "proc-macro2",
+ "quote",
+ "syn",
+]
+
+[[package]]
+name = "windows-link"
+version = "0.1.3"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "5e6ad25900d524eaabdbbb96d20b4311e1e7ae1699af4fb28c17ae66c80d798a"
+
+[[package]]
+name = "windows-result"
+version = "0.3.4"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "56f42bd332cc6c8eac5af113fc0c1fd6a8fd2aa08a0119358686e5160d0586c6"
+dependencies = [
+ "windows-link",
+]
+
+[[package]]
+name = "windows-strings"
+version = "0.4.2"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "56e6c93f3a0c3b36176cb1327a4958a0353d5d166c2a35cb268ace15e91d3b57"
+dependencies = [
+ "windows-link",
+]
+
 [[package]]
 name = "windows-sys"
 version = "0.59.0"